looking at the adapter and the itb's i think BlueRB240 is on the right line, as the injectors when on the original engine point directly into the head as you can see here
injector direction
placement on head
where as the adaptor plate you have doesn't help with this
also the inlet trumpet length may not be ideal, here are the stock bmw ones
have you thought about where your going to try and modify this to correct the problems? imo i'd put the old exhaust back on so you are only chasing problems at one point as changing both like you did makes it harder to work out what made the main differences