If the car runs great now, it will be just as reliable with the AEM EMS as it would be with an OEM ECU. If you do run into problems, frankly having an AEM EMS is even better for diagnosing and fixing problems than a stock ECU. You won't need to dyno tune or re-tune the car unless you make a change that would warrant that (change of injectors, running more boost, new cams, etc.). If there is a mechanical problem like your plug wires go bad or something, and you replace the plug wires, you'll be all fixed. No need to re-tune.
unijabnx2000 could decide to fix his cold start problems himself if he wanted to, or he can take it to a tuner. Anyone with a laptop with serial port and serial cable can work on an AEM EMS (or use a serial-to-USB adapter for newer laptops). Base-line calibrations for our engines are very good and problems like that are easily fixed with a little know-how on all kinds of common engine configurations.