This is basically what you need to do. And no, I don't think you need any ignitors at all with the CDI + COP system.
Start on the left on this picture. Your AEM EMS will have 4 ignition signal outputs which will go to the CDI box. The CDI box will have 4 power outputs for the coils and some grounds (in this case, two but you might have 1 or 4). That's basically all there is too it, except you also have power, ground and relay signal for the CDI box's power and on/off needs and the CDI box provides a tach output signal. That's really the gist of it I believe, but whichever CDI box you get will have the correct directions.
Start on the left on this picture. Your AEM EMS will have 4 ignition signal outputs which will go to the CDI box. The CDI box will have 4 power outputs for the coils and some grounds (in this case, two but you might have 1 or 4). That's basically all there is too it, except you also have power, ground and relay signal for the CDI box's power and on/off needs and the CDI box provides a tach output signal. That's really the gist of it I believe, but whichever CDI box you get will have the correct directions.