Acutally, stock det power levels, you are fine on the auto. dont rag it in hot weather. or buy some extra coolers for the tranny.
the ecu and tcu are different. if you are just doing a det swap, just throw it in, get a calum ecu and thats it. yes the ecu's are a tad different, but the tcu controls shifts.
you CAN do a det with an auto. you can get up to about 225ish hp before the tranny really doesnt like it. but if you have lofty goals, use the time the engine is out to do the 5 speed swap...or buy a 5speed car and use the auto as a daily