Most verticals have the inlet/oulet on the same side of the intercooler and would cause drastic changes in direction of airflow and I would think I mean logicly that would not be as efficient to have to do two 90* turns basicly.
Most big power cars run water to air intercoolers with inlet and outlets on the same side. Doesn't seem to hurt anything.
And also don't you plan on running a back door intercooler setup, that's also two 90 degree turns.
I'm thinking about doing something like this with custom tanks and a good core, my only concern was the heat soaking on one side but I'm gonna think about a divider setup now.
I like the idea of having more bars of less length. The only time temp. Changes rapidly is at the first contact of a cooler surface, then change takes more time, so the 2nd half of a long cooler prob. Isn't cooling significantly. Therefore its a waste. Where as on the vertical there is more oppertunities for initial contact with the cooler surface, and less air per bar, leading to better efficiency.