coheed, i just recently tuned a rsx with a gt30r on it, .63 turbine, stock motor otherwise. 438whp, 323tq at 1 bar. not reving past 8000rpms. this power is mostly obtained because of the higher flowing cylinder head and yes, the vtc gear.
turbochargers create air flow and they flow at diffrent rates at different pressure ratios. you must also remember that pressure is only restriction to flow. when port your cylinder head in a turbo build u are gaining power in ways more than just allowing more air to flow into the motor.
as for the larger valves on stock seats... mot all ve heads are equal. some sr16ve heads actually have 28mm exhaust valves. some ve heads have the same exhaust valve seat as the det and will support a 31mm valve if the valve job is done correctly. going 1mm over on the stock intake seats is not good because u can not get a full valve grind on the top half of the seat through the transition to the combustion chamber. this is a situation where .5mm over sitting a little higher up on the seat will be your best gain.
coheed, how much psi are you running in you current setup? is there a reason you are using the .63 housing?
-Ted