Do you have any way to measure pressure in the exhaust system pre and or post turbine? A pressure reading will give you a good idea of what's going on in your system. Do you have any pics of the manifold/downpipe?
I've seen some weird stuff happen with downpipes/exhaust before. For example, one customer had a well thought out setup with a T4 sized turbo capable of 750+hp. For some reason he couldn't make more than 400-500hp (don't remember the exact figures) on the rollers no matter how hard it was pushed. And it was pushed...everything would glow red hot, manifold/turbo/downpipe etc. Turns out, that the flex section in the downpipe had collapsed internally reducing the downpipe to the dia. of a quarter! You couldn't tell from the exterior though. All in all, the lesson learned was do not use internally lined flex sections on turbo cars lol.
I've seen some weird stuff happen with downpipes/exhaust before. For example, one customer had a well thought out setup with a T4 sized turbo capable of 750+hp. For some reason he couldn't make more than 400-500hp (don't remember the exact figures) on the rollers no matter how hard it was pushed. And it was pushed...everything would glow red hot, manifold/turbo/downpipe etc. Turns out, that the flex section in the downpipe had collapsed internally reducing the downpipe to the dia. of a quarter! You couldn't tell from the exterior though. All in all, the lesson learned was do not use internally lined flex sections on turbo cars lol.